This function reads SHARK column names from a specified tab-separated values (TSV) file included in the package. These columns are used for submitting IFCB data to https://shark.smhi.se/.
Details
For a detailed example of a data submission, see ifcb_get_shark_example.
Examples
shark_colnames <- ifcb_get_shark_colnames()
print(shark_colnames)
#> [1] MYEAR STATN SAMPLING_PLATFORM
#> [4] PROJ ORDERER SHIPC
#> [7] CRUISE_NO DATE_TIME SDATE
#> [10] STIME TIMEZONE LATIT
#> [13] LONGI POSYS WADEP
#> [16] MPROG MNDEP MXDEP
#> [19] SLABO ACKR_SMP SMTYP
#> [22] PDMET SMVOL METFP
#> [25] IFCBNO SMPNO LATNM
#> [28] SFLAG LATNM_SFLAG TRPHY
#> [31] APHIA_ID IMAGE_VERIFICATION VERIFIED_BY
#> [34] COUNT ABUND BIOVOL
#> [37] C_CONC QFLAG COEFF
#> [40] CLASS_NAME CLASS_F1 UNCLASSIFIED_COUNTS
#> [43] UNCLASSIFIED_ABUNDANCE UNCLASSIFIED_VOLUME METOA
#> [46] ASSOCIATED_MEDIA CLASSPROG ALABO
#> [49] ACKR_ANA ANADATE METDC
#> [52] TRAINING_SET CLASSIFIER_USED MANUAL_QC_DATE
#> [55] PRE_FILTER_SIZE PH_FB CHL_FB
#> [58] CDOM_FB PHYC_FB PHER_FB
#> [61] WATERFLOW_FB TURB_FB PCO2_FB
#> [64] TEMP_FB PSAL_FB OSAT_FB
#> [67] DOXY_FB
#> <0 rows> (or 0-length row.names)
shark_colnames_minimal <- ifcb_get_shark_colnames(minimal = TRUE)
print(shark_colnames_minimal)
#> [1] MYEAR STATN PROJ
#> [4] ORDERER SHIPC SDATE
#> [7] STIME LATIT LONGI
#> [10] POSYS MNDEP MXDEP
#> [13] SLABO ACKR_SMP SMTYP
#> [16] SMVOL IFCBNO SMPNO
#> [19] LATNM SFLAG TRPHY
#> [22] IMAGE_VERIFICATION VERIFIED_BY COUNT
#> [25] QFLAG COEFF CLASS_F1
#> [28] UNCLASSIFIED_COUNTS METOA ASSOCIATED_MEDIA
#> [31] CLASSPROG TRAINING_SET ALABO
#> [34] ACKR_ANA ANADATE METDC
#> [37] CLASSIFIER_USED
#> <0 rows> (or 0-length row.names)