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Get Shark Column Names

Source: R/ifcb_get_shark_colnames.R
ifcb_get_shark_colnames.Rd

This function reads SHARK column names from a specified tab-separated values (TSV) file included in the package. These columns are used for submitting IFCB data to https://shark.smhi.se/en/.

Usage

ifcb_get_shark_colnames(minimal = FALSE)

Arguments

minimal

A logical value indicating whether to load only the minimal set of column names required for data submission to SHARK. Default is FALSE.

Value

An empty data frame containing the SHARK column names.

Details

For a detailed example of a data submission, see ifcb_get_shark_example.

See also

ifcb_get_shark_example

Examples

shark_colnames <- ifcb_get_shark_colnames()
print(shark_colnames)
#> # A tibble: 0 × 67
#> # ℹ 67 variables: MYEAR <dbl>, STATN <chr>, SAMPLING_PLATFORM <chr>,
#> #   PROJ <chr>, ORDERER <chr>, SHIPC <chr>, CRUISE_NO <dbl>, DATE_TIME <dbl>,
#> #   SDATE <date>, STIME <time>, TIMEZONE <chr>, LATIT <dbl>, LONGI <dbl>,
#> #   POSYS <chr>, WADEP <lgl>, MPROG <chr>, MNDEP <dbl>, MXDEP <dbl>,
#> #   SLABO <chr>, ACKR_SMP <chr>, SMTYP <chr>, PDMET <chr>, SMVOL <dbl>,
#> #   METFP <chr>, IFCBNO <chr>, SMPNO <chr>, LATNM <chr>, SFLAG <chr>,
#> #   LATNM_SFLAG <chr>, TRPHY <chr>, APHIA_ID <dbl>, IMAGE_VERIFICATION <chr>, …

shark_colnames_minimal <- ifcb_get_shark_colnames(minimal = TRUE)
print(shark_colnames_minimal)
#> # A tibble: 0 × 37
#> # ℹ 37 variables: MYEAR <dbl>, STATN <chr>, PROJ <chr>, ORDERER <chr>,
#> #   SHIPC <chr>, SDATE <date>, STIME <time>, LATIT <dbl>, LONGI <dbl>,
#> #   POSYS <chr>, MNDEP <dbl>, MXDEP <dbl>, SLABO <chr>, ACKR_SMP <chr>,
#> #   SMTYP <chr>, SMVOL <dbl>, IFCBNO <chr>, SMPNO <chr>, LATNM <chr>,
#> #   SFLAG <chr>, TRPHY <chr>, IMAGE_VERIFICATION <chr>, VERIFIED_BY <lgl>,
#> #   COUNT <dbl>, QFLAG <lgl>, COEFF <dbl>, CLASS_F1 <dbl>,
#> #   UNCLASSIFIED_COUNTS <dbl>, METOA <chr>, ASSOCIATED_MEDIA <chr>, …