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Summarize TreeBagger Classifier Results

Source: R/ifcb_helper_functions.R
summarize_TBclass.Rd

This function reads a TreeBagger classifier result file (.mat or .h5 format) and summarizes the number of targets in each class based on the classification scores and thresholds.

Usage

summarize_TBclass(classfile, adhocthresh = NULL, use_python = FALSE)

Arguments

classfile

Character string specifying the path to the classifier result file (.mat or .h5 format).

adhocthresh

Numeric vector specifying the adhoc thresholds for each class. If NULL (default), no adhoc thresholding is applied. If a single numeric value is provided, it is applied to all classes. Not available for .h5 files.

use_python

Logical. If TRUE, uses Python-based reading for .mat files. Default is FALSE.

Value

A list containing three elements:

classcount

Numeric vector of counts for each class based on the winning class assignment.

classcount_above_optthresh

Numeric vector of counts for each class above the optimal threshold for maximum accuracy.

classcount_above_adhocthresh

Numeric vector of counts for each class above the specified adhoc thresholds (if provided).