Get sample paths from sample name

Constructs file paths to IFCB data files (ROI, ADC) based on the standard IFCB folder structure: roi_folder/YYYY/DYYYYMMDD/sample_name.ext

Usage

get_sample_paths(sample_name, roi_folder)

Arguments

sample_name

Sample name (e.g., "D20220522T000439_IFCB134")

roi_folder

Base ROI folder path

Value

List with components: year, date_part, roi_path, adc_path, adc_folder

Examples

# Get paths for a sample
paths <- get_sample_paths("D20230101T120000_IFCB134", "/data/ifcb/raw")
print(paths$year)       # "2023"
#> [1] "2023"
print(paths$date_part)  # "D20230101"
#> [1] "D20230101"
print(paths$roi_path)   # "/data/ifcb/raw/2023/D20230101/D20230101T120000_IFCB134.roi"
#> [1] "/data/ifcb/raw/2023/D20230101/D20230101T120000_IFCB134.roi"