Run the ClassiPyR Shiny Application — run

Launches the ClassiPyR Shiny app for manual image classification and validation of IFCB data. This app relies on the iRfcb package for reading IFCB data files and requires Python (via reticulate) for saving MATLAB .mat files.

Usage

run_app(venv_path = NULL, reset_settings = FALSE, launch.browser = TRUE, ...)

Arguments

venv_path: Optional path to a Python virtual environment. When specified, this path takes priority over any saved venv path in settings, both for Python initialization at startup and in the Settings UI. If NULL (default), the app uses any saved venv path from settings, or falls back to a 'venv' folder in the current working directory.
reset_settings: If TRUE, deletes saved settings before starting the app. Useful for troubleshooting or starting fresh. Default is FALSE.
launch.browser: If TRUE (default), opens the app in the system's default web browser. If FALSE, opens in RStudio viewer (if available). Set to a function to customize browser launching behavior.
...: Additional arguments passed to runApp

Value

This function does not return; it runs the Shiny app

Examples

if (FALSE) { # \dontrun{
# Run with default settings (opens in browser)
run_app()

# Run with a specific Python virtual environment
run_app(venv_path = "/path/to/my/venv")

# Run on a specific port
run_app(port = 3838)

# Open in RStudio viewer instead of browser
run_app(launch.browser = FALSE)

# Reset all settings and start fresh
run_app(reset_settings = TRUE)
} # }