Save class taxonomy mappings to SQLite

Stores class-to-AphiaID mappings (with optional accepted names) in the class_taxonomy table of the annotations database.

Usage

save_class_taxonomy_db(
  db_path,
  class_aphia_map,
  accepted_name_map = NULL,
  scientific_name_map = NULL,
  accepted_aphia_map = NULL
)

Arguments

db_path

Path to the SQLite database file.

class_aphia_map

Named character vector mapping class names to AphiaID.

accepted_name_map

Optional named character vector mapping class names to WoRMS accepted names.

scientific_name_map

Optional named character vector mapping class names to matched scientific names (query record).

accepted_aphia_map

Optional named character vector mapping class names to accepted WoRMS AphiaID values.

Value

Logical TRUE on success, FALSE on failure.

Examples

if (FALSE) { # \dontrun{
db_path <- get_db_path(get_default_db_dir())
save_class_taxonomy_db(
  db_path,
  class_aphia_map = c("Prorocentrum micans" = "109636")
)
} # }