Version 0.3

iRfcb 0.3.0

New features

• Introduced unit testing with testthat for improve stability.
• Improved consistency and functionality across multiple functions.

iRfcb 0.3.1

Minor improvements and fixes

• Corrected documentation errors.

iRfcb 0.3.2

Minor improvements and fixes

• Replaced test data with a smaller dataset.
• Improved unit test coverage.

iRfcb 0.3.3

Minor improvements and fixes

• Fixed manual .mat count edge case.
• Switched to curl for downloads.
• Parameterized PSD micron factor in ifcb_psd() with argument micron_factor.
• General clean-up of minor improvements and fixes.

iRfcb 0.3.4

Minor improvements and fixes

• Added option to summarize biovolumes from manual files in ifcb_summarize_biovolumes().
• Added sleep_time parameter for ifcb_download_test_data().

iRfcb 0.3.5

Minor improvements and fixes

• Improved error handling in WoRMS API calls with multiple attempts in iRfcb:::retrieve_worms_records().
• Updated package title.

Deprecations

• Deprecated ifcb_get_svea_position() (replaced by ifcb_get_ferrybox_data()).

iRfcb 0.3.6

Minor improvements and fixes

• Removed Öresund from included Baltic Sea shape file used in ifcb_is_in_basin().
• Updated SHARK column names for compatibility in ifcb_get_shark_example() and ifcb_get_shark_colnames().

iRfcb 0.3.7

New features

• Added classifier name to output from MATLAB extraction in ifcb_summarize_biovolumes().

iRfcb 0.3.8

Minor improvements and fixes

• Added marine_only to ifcb_is_diatom(), iRfcb:::retrieve_worms_records(), ifcb_summarize_biovolumes() and ifcb_extract_biovolumes().
• Added feature_recursive to ifcb_extract_biovolumes() and ifcb_summarize_biovolumes().
• Added mat_recursive to ifcb_extract_biovolumes() and ifcb_summarize_biovolumes().
• Added hdr_recursive to ifcb_summarize_biovolumes().
• Extracted helper function from ifcb_is_diatom().

iRfcb 0.3.9

Minor improvements and fixes

• Fixed edge case where nrow(taxa_list) == 0 in ifcb_count_mat_annotations().
• Added mat_recursive option to ifcb_count_mat_annotations().
• Added manual_recursive option to ifcb_extract_annotated_images() and ifcb_zip_matlab().
• Added roi_recursive option to ifcb_extract_annotated_images().
• Added data_recursive option to ifcb_zip_matlab().
• Added feature_recursive option to ifcb_zip_matlab().

iRfcb 0.3.10

Minor improvements and fixes

• Updated documentation and examples.

Deprecations

• Removed deprecated function ifcb_get_svea_position().
• Removed helper iRfcb:::handle_missing_positions().
• Deprecated arguments manual_folder, feature_folder, and class_folder in several functions (ifcb_count_mat_annotations(), ifcb_extract_biovolumes(), ifcb_read_features(), ifcb_summarize_biovolumes().

iRfcb 0.3.11

New features

• Added ifcb_summarize_png_metadata() to summarize EcoTaxa metadata.
• Added ifcb_get_ecotaxa_example() to extract EcoTaxa headers and example data.

Minor improvements and fixes

• Large ZIP files can now be split using helper iRfcb:::split_large_zip() in ifcb_zip_pngs().

Deprecations

• Deprecated ifcb_summarize_png_data() (replaced by ifcb_summarize_png_counts()).

iRfcb 0.3.12

New features

• Added ifcb_create_empty_manual_file() to create new manual .mat files.
• Added ifcb_annotate_batch() to annotate multiple .mat files in a batch based on .png images.

Minor improvements and fixes

• Compressed .mat files to save space using do_compression argument in:
  • ifcb_correct_annotation()
  • ifcb_replace_mat_values()

iRfcb 0.3.13

New features

• Added ifcb_merge_manual() to merge manual .mat datasets.
• Added ifcb_adjust_classes() to adjust classes in manual data.
• Added ifcb_create_class2use() to generate a class2use file.

iRfcb 0.3.14

Minor improvements and fixes

• Updated SHARK example in ifcb_get_shark_example() and ifcb_get_shark_colnames() for testing and documentation.

iRfcb 0.3.15

Minor improvements and fixes

• Fixed issue in ifcb_get_ferrybox_data() where multiple close ferrybox timestamps caused duplicate rows. Now returns only the nearest match.